PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G226700.3
Common NameB456_005G226700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 379aa    MW: 42525.1 Da    PI: 9.4949
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G226700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055341360120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C +C+ ++ r+++L++H+
  Gorai.005G226700.3 341 FRCAICNITCGRSEDLNSHL 360
                         89*****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031343.9E-201586IPR004345TB2/DP1/HVA22-related protein
SuperFamilySSF576677.74E-11190234No hitNo description
SMARTSM004512.1E-4201235IPR003604Zinc finger, U1-type
PfamPF128745.9E-10204228No hitNo description
SMARTSM003550.44204228IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.58E-7330370No hitNo description
SMARTSM004510.004338372IPR003604Zinc finger, U1-type
PfamPF128742.2E-4341365No hitNo description
SMARTSM0035510341365IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280343365IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLSFSCLASL CFRVSSAIEA NSNTDTKKLV TYWIIFSLIS LFEHAFMGIL QWLPFWPYMK  60
LTIVCWMMIP HFDGAFYVYN HFVHPCLYMD LPTIINWFKK QQDLFLKDNF LVEVADDFVK  120
AHGPTEVQEK LIANEPKGTE TSILQKGIKP VQIAEKSEVA PILKTDPNVI QTVNNTTVTL  180
SETVGEVGPD LPKISSDKQV QKEWTCAMCQ VTTTSEKTLK SHLQGRKHKN KLMQANNQPC  240
KGKAGLASKV KQSEVSRKEP QKKGSKNYEP PKGQMSASSA ACSNAVNPKT EMSKSNLPKE  300
EWKKVIPTTN MVGNHVKSSE NVQGQQQQVE KEHNKTKIPQ FRCAICNITC GRSEDLNSHL  360
WGRKHLAKLN SLGRGQLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480067.10.0PREDICTED: uncharacterized protein LOC105795126 isoform X1
TrEMBLA0A0D2SLY30.0A0A0D2SLY3_G
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]